I'm kinda a newbie have been using MCE buddy with WMC (for over a year) and have switch to HDHomerun primes dvr ( 2 of the prime boxes)

What i am seeing now is that on every file the last commercial is not removed. on all the shows.
am using mce and comskip default (that comes with MCE) and the donated version both do the same thing.
Anyone have the same problem? or solution?
Thanks ahead.